Genome Sequencing and Assembly of Octodon degus (Degu). - SRA

SRX114019: Genome Sequencing and Assembly of Octodon degus (Degu).
4 ILLUMINA (Illumina HiSeq 2000) runs: 163.9M spots, 33.1G bases, 19.3Gb downloads

UUID: d44467ba-49cf-4c3a-8dcc-21a80d0ad5aa

Design: 3kb genomic insert library

Submitted by: Broad Institute (BI)

Study: Octodon degus Genome sequencing and assembly

PRJNA74595 • SRP010050 • All experiments • All runs

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Octodon degus (Degu) genome sequencing using Illumina sequencing with multiple library types.

Sample: Generic sample from Octodon degus

SAMN00769067 • SRS284323 • All experiments • All runs

Organism: Octodon degus

Library:

Name: Solexa-73690

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 7 attributes...) (hide...)

gssr_ids: 134044.0, 134045.0

lsids: broadinstitute.org:bsp.prod.sample:2BL13, broadins (show full text...)(hide...)

broadinstitute.org:bsp.prod.sample:2BL13, broadinstitute.org:bsp.prod.sample:2BL14

material_type: DNA:DNA Genomic

project: G15051

root_sample_id: SM-24425

sample_ids: SM-2BL13, SM-2BL14

work_request: 27051

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2011-12-21 19:56:11.0	GAPipeline	RTA1.12.4.2	Sequencer Application 1.4.8

Runs: 4 runs, 163.9M spots, 33.1G bases, 19.3Gb

Run	# of Spots	# of Bases	Size	Published
SRR394633	43,004,567	8.7G	5.1Gb	2012-01-04
SRR394634	43,306,816	8.7G	5.2Gb	2012-01-04
SRR394640	34,372,788	6.9G	3.9Gb	2012-01-04
SRR394647	43,195,927	8.7G	5.1Gb	2012-01-04

ID:: 131756

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Sequence Read Archive

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